Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dnajb13DnaJ heat shock protein family (Hsp40) member B13. (319 aa)    
Predicted Functional Partners:
stip1
Stress-induced phosphoprotein 1.
   
 0.878
LOC101166977
Heat shock protein 4a.
 
 0.848
hspa4
Heat shock protein 4b.
 
 0.845
LOC101164253
Uncharacterized protein.
   
 
 0.808
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
 
 0.807
LOC101159735
Radial spoke head component 4A.
   
 
 0.803
hspa9
Heat shock protein 9; Belongs to the heat shock protein 70 family.
 
 0.801
RSPH1
Radial spoke head component 1.
   
 
 0.789
efhc1
EF-hand domain (C-terminal) containing 1.
   
 
 0.781
hspa4l
Heat shock protein 4 like.
 
 0.778
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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