STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
farsbPhenylalanyl-tRNA synthetase subunit beta; Belongs to the EF-1-beta/EF-1-delta family. (846 aa)    
Predicted Functional Partners:
farsa
Phenylalanyl-tRNA synthetase subunit alpha.
  
 0.999
fars2
Phenylalanyl-tRNA synthetase 2, mitochondrial.
  
 0.997
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
 
 0.971
alg9
Ferredoxin-fold anticodon binding domain containing 1.
  
 0.960
yars1
Tyrosine--tRNA ligase.
  
  
 0.959
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
 
      0.884
SGPP2
Sphingosine-1-phosphate phosphatase 2.
     
 0.869
iars2
Isoleucyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.857
iars1
Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.846
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.835
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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