Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atl1Atlastin GTPase 1. (559 aa)    
Predicted Functional Partners:
spast
Spastin; Belongs to the AAA ATPase family.
   
 
 0.925
reep1
Receptor expression-enhancing protein.
    
 
 0.903
LOC101163837
Reticulon.
    
 
 0.770
nipa1
NIPA magnesium transporter 1.
      
 0.747
zfyve27
Zinc finger, FYVE domain containing 27.
    
 
 0.744
LOC101161432
Reticulon.
    
 
 0.702
arl6ip1
ADP-ribosylation factor-like 6 interacting protein 1.
    
 
 0.684
reep2
Receptor expression-enhancing protein.
   
 
 0.684
rtn1
Reticulon.
    
 
 0.661
LOC101163499
Neurofilament, light polypeptide b; Belongs to the intermediate filament family.
   
  
 0.628
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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