STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169795Protein phosphatase; Belongs to the PP2C family. (297 aa)    
Predicted Functional Partners:
nat8l
N-acetyltransferase 8-like.
   
  
 0.623
H2MY48_ORYLA
Uncharacterized protein.
   
  
 0.622
zer1
Zyg-11 related, cell cycle regulator.
      
 0.609
mib1
Mindbomb E3 ubiquitin protein ligase 1.
   
   0.602
LOC101154777
Cyclin-dependent kinase 11B.
      
 0.601
trmt61b
tRNA methyltransferase 61B.
    
 
 0.555
sox18
Uncharacterized protein.
      
 0.539
stk16
Serine/threonine kinase 16.
   
  
 0.522
bnip3
BCL2 interacting protein 3.
    
   0.513
pdp1
Pyruvate dehyrogenase phosphatase catalytic subunit 1.
    
 
 0.511
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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