STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LYZ3_ORYLAUncharacterized protein. (267 aa)    
Predicted Functional Partners:
ptch1
Patched 1.
   
 0.520
wnt1
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.520
ptch2
Patched 2.
   
 0.520
H2M6E4_ORYLA
Uncharacterized protein.
   
  0.517
wnt11
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.517
dvl3
Dishevelled segment polarity protein 3a.
    
 0.517
LOC101165932
Intersectin 2a.
   
  0.517
dvl2
Dishevelled segment polarity protein 2.
    
 0.517
ENSORLP00000034742
Uncharacterized protein.
   
  0.517
ENSORLP00000036645
EH domain-containing protein.
   
  0.517
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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