Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
shisa2Shisa family member 2b. (289 aa)    
Predicted Functional Partners:
wasf3
WASP family member 3b.
      
 0.672
aifm1
Apoptosis inducing factor mitochondrion associated 1.
      
 0.647
tagln3
Transgelin; Belongs to the calponin family.
      
 0.635
gsx1
Developmental transcription factor.
      
 0.631
mtif3
Mitochondrial translational initiation factor 3.
   
  
 0.604
H2M6P8_ORYLA
CDC42 effector protein (Rho GTPase binding) 5.
      
 0.599
gtf3a
General transcription factor IIIA, b.
      
 0.587
alkbh4
AlkB homolog 4, lysine demthylase.
      
 0.582
ino80e
INO80 complex subunit E.
      
 0.565
ZADH2
Zinc binding alcohol dehydrogenase domain containing 2.
      
 0.564
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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