Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fyttd1Uncharacterized protein. (319 aa)    
Predicted Functional Partners:
Zc3h11a
Uncharacterized protein.
     
 0.499
thoc7
THO complex 7.
     
 0.489
thoc3
THO complex 3.
     
 0.489
thoc6
THO complex 6.
     
 0.475
evc
Uncharacterized protein.
  
     0.469
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
      
 0.462
thoc5
THO complex 5.
     
 0.457
LOC101166514
ATP synthase inhibitory factor subunit 1b.
      
 0.450
brca1
Uncharacterized protein.
  
     0.443
ncbp3
Nuclear cap binding subunit 3.
      
 0.430
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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