STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168325KH and NYN domain containing. (830 aa)    
Predicted Functional Partners:
casp8
Uncharacterized protein; Belongs to the peptidase C14A family.
   
 
 0.647
LOC100125536
Uncharacterized protein; Belongs to the peptidase C14A family.
   
 
 0.593
parp12
Poly (ADP-ribose) polymerase family, member 12a.
    
 
 0.580
ENSORLP00000027520
Ubiquitin-like domain-containing protein.
    
   0.569
ENSORLP00000045836
Ubiquitin-like domain-containing protein.
    
   0.569
ikbkg
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
  0.552
optn
Optineurin.
    
  0.441
LOC101161108
Si:ch73-252i11.1.
    
 
 0.417
sec62
SEC62 homolog, preprotein translocation factor.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.