Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168325KH and NYN domain containing. (830 aa)    
Predicted Functional Partners:
LOC101161108
Si:ch73-252i11.1.
    
 
 0.803
casp8
Uncharacterized protein; Belongs to the peptidase C14A family.
     
 0.722
ubc
Ubiquitin B.
    
 
 0.704
ikbkg
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
  0.702
ENSORLP00000045836
Ubiquitin-like domain-containing protein.
    
 
 0.693
ENSORLP00000027520
Ubiquitin-like domain-containing protein.
    
 
 0.687
parp12
Poly (ADP-ribose) polymerase family, member 12a.
    
 
 0.665
LOC100125536
Uncharacterized protein; Belongs to the peptidase C14A family.
     
 0.616
LOC101170530
Ring finger and CCCH-type domains 2.
   
  
 0.580
sec62
SEC62 homolog, preprotein translocation factor.
      
 0.577
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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