close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pald1Phosphatase domain containing paladin 1a. (892 aa)    
Predicted Functional Partners:
LOC101166995
Zinc finger protein 646.
      
 0.886
chst8
Carbohydrate sulfotransferase.
      
 0.811
parp2
Poly [ADP-ribose] polymerase.
      
 0.746
LOC101157893
Syntaxin 4; Belongs to the syntaxin family.
      
 0.719
LOC101172200
ADAM metallopeptidase with thrombospondin type 1 motif, 14.
   
  
 0.709
depdc4
Si:ch211-265o23.1.
      
 0.691
chst2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.668
LOC101157106
Syntaxin 1B; Belongs to the syntaxin family.
      
 0.648
acbd4
Acyl-CoA binding domain containing 4.
      
 0.644
tcp11
Uncharacterized protein.
      
 0.627
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.