STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170947Protein phosphatase, Mg2+/Mn2+ dependent, 1Nb (putative). (430 aa)    
Predicted Functional Partners:
map2k4
Mitogen-activated protein kinase kinase 4; Belongs to the protein kinase superfamily.
   
 
 0.918
LOC101161098
Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily.
   
 
 0.918
LOC101163933
Mitogen-activated protein kinase kinase 6.
    
 0.914
LOC101170843
Protein kinase domain-containing protein.
    
 0.914
ppm1a
Protein phosphatase, Mg2+/Mn2+ dependent, 1Aa.
  
  
 
0.903
LOC101159369
Protein phosphatase, Mg2+/Mn2+ dependent, 1Na (putative).
  
  
 
0.901
mybpc2
Uncharacterized protein.
      
 0.499
ubc
Ubiquitin B.
   
 0.475
ube2l3
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.445
SMAD4
Mothers against decapentaplegic homolog.
   
 0.435
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.