STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc61Coiled-coil domain containing 61. (513 aa)    
Predicted Functional Partners:
LOC101155694
Peptide YYa.
    
 0.720
npy
Uncharacterized protein.
    
 0.719
LOC101168692
Prepronociceptin a.
    
  0.473
pomc
Proopiomelanocortin.
    
 0.469
LOC101164777
Uncharacterized protein.
    
 0.469
penk
Uncharacterized protein.
    
 0.451
LOC101157910
Somatostatin.
    
  0.436
pdyn
Prodynorphin.
     
 0.420
agt
Angiotensinogen; Belongs to the serpin family.
    
  0.409
pibf1
Progesterone immunomodulatory binding factor 1.
     
 0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.