STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cnih1Cornichon family AMPA receptor auxiliary protein 1. (160 aa)    
Predicted Functional Partners:
prpf19
Pre-mRNA processing factor 19.
 
      0.882
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.839
LOC101161906
Transmembrane p24 trafficking protein 2.
    
 0.762
LOC101166855
Transforming growth factor, alpha.
     
 0.739
gria2
Uncharacterized protein.
    
 0.735
SEC24C
SEC24 homolog C, COPII coat complex component.
     
 0.724
sec24d
Uncharacterized protein.
     
 0.724
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
   
 0.694
LOC101171999
Glutamate ionotropic receptor AMPA type subunit 3.
    
 0.689
LOC101158221
Glutamate receptor, ionotropic, AMPA 3a.
    
 0.689
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.