STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161915Plastin 3. (622 aa)    
Predicted Functional Partners:
capzb
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 0.741
LOC100049345
Survival of motor neuron 1, telomeric.
    
 
 0.648
ttc21b
Tetratricopeptide repeat domain 21B.
   
  
 0.521
LOC101169939
RPGRIP1 like.
    
 
 0.519
LOC101157097
Glycogenin 1b.
      
 0.515
LOC101169002
Glycogenin 1a.
      
 0.511
mbtps1
Membrane-bound transcription factor peptidase, site 1.
      
 0.499
dbnl
Drebrin-like b.
   
 
 0.495
dbn1
Drebrin 1.
   
 
 0.495
LOC101166140
Si:dkey-40c11.2.
   
 
 0.495
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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