STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165127UDENN FLCN/SMCR8-type domain-containing protein. (884 aa)    
Predicted Functional Partners:
c9orf72
Zgc:100846.
    
 0.983
wdr41
WD repeat domain 41.
    
 0.976
ulk1
Unc-51 like autophagy activating kinase 1.
   
 0.921
LOC101167046
Unc-51 like autophagy activating kinase 1a.
   
 0.921
LOC101160680
Unc-51 like autophagy activating kinase 2.
   
 0.919
tank
TRAF family member-associated NFKB activator.
     
 0.911
smcr8
Smith-Magenis syndrome chromosome region, candidate 8a.
  
  
 
0.909
RAB39B
RAB39B, member RAS oncogene family.
    
 0.772
RAB8A
RAB8A, member RAS oncogene family.
    
 0.701
LOC101170877
RAB8A, member RAS oncogene family.
    
 0.701
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.