STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100049216Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (574 aa)    
Predicted Functional Partners:
LOC101159928
D site albumin promoter binding protein a.
   
 
 0.798
LOC101164258
TEF transcription factor, PAR bZIP family member a.
   
 
 0.772
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 
  0.622
tac1
Uncharacterized protein.
      
 0.610
LOC101172818
TEF transcription factor, PAR bZIP family member b.
   
 
 0.597
six2
SIX homeobox 2a.
   
 
 0.594
LOC101162149
SIX homeobox 9.
   
 
 0.594
LOC101162386
SIX homeobox 5.
   
 
 0.594
six4
SIX homeobox 4a.
   
 
 0.594
six1
SIX homeobox 1a.
   
 
 0.594
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.