STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164312Lemur tyrosine kinase 2. (1477 aa)    
Predicted Functional Partners:
grxcr1
Glutaredoxin and cysteine rich domain containing 1 a.
      
 0.610
slc30a9
Solute carrier family 30 member 9.
      
 0.595
il34
Interleukin 34.
   
 0.543
ctnna1
Catenin (cadherin-associated protein), alpha 1.
      
 0.501
Kitlg
Kit ligand a.
    
 0.501
LOC101168287
Colony stimulating factor 1b (macrophage).
   
 0.460
grb2
Growth factor receptor-bound protein 2b.
   
 0.421
LOC101158777
Synuclein, beta; Belongs to the synuclein family.
   
  
 0.418
LOC101161449
PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.
    
 0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.