STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168740Mohawk homeobox b. (385 aa)    
Predicted Functional Partners:
LOC101172280
Ring finger protein 11.
   
  
 0.571
rnf11
Ring finger protein 11b.
   
  
 0.571
LOC101174098
Interferon induced transmembrane protein 5.
   
  
 0.568
hao1
Hydroxyacid oxidase (glycolate oxidase) 1.
      
 0.567
LOC101173336
Glypican 1b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
      
 0.566
tgfbrap1
Transforming growth factor, beta receptor associated protein 1.
      
 0.527
ndrg4
NDRG family member 4.
   
  
 0.525
lipg
Lipase, endothelial.
    
 
 0.514
LOC105354378
Troponin T type 2a (cardiac).
      
 0.513
LOC101160884
Hydroxysteroid (17-beta) dehydrogenase 12b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.511
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.