STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156969Uncharacterized protein. (281 aa)    
Predicted Functional Partners:
LOC101168588
Leucine rich repeat containing 4.1.
      
 0.725
rbm28
RNA binding motif protein 28.
 
    
 0.704
lrrc4
Leucine rich repeat containing 4.2.
      
 0.600
sh3yl1
SH3 and SYLF domain containing 1.
      
 0.530
LOC101170654
Uncharacterized protein.
   
  
 0.460
LOC101166592
Protein tyrosine phosphatase receptor type Na.
   
  
 0.460
LOC101159914
Si:ch211-13k12.2.
      
 0.419
LOC101155504
Uncharacterized protein.
      
 0.419
LOC101166672
Uncharacterized protein.
      
 0.419
rgl1
Ral guanine nucleotide dissociation stimulator-like 1.
      
 0.407
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.