STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tuft1Tuftelin 1a. (385 aa)    
Predicted Functional Partners:
LOC101162474
Hyaluronan and proteoglycan link protein 2.
      
 0.577
tasp1
Taspase, threonine aspartase, 1.
      
 0.558
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
    
 
 0.526
LOC101170808
Epiphycan.
      
 0.510
LOC101174621
Brevican.
      
 0.508
fmod
Fibromodulin a.
      
 0.508
bcan
Uncharacterized protein.
      
 0.508
prelp
Proline/arginine-rich end leucine-rich repeat protein.
      
 0.504
podn
Podocan.
      
 0.459
aspn
Asporin.
      
 0.438
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.