STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164494Vascular endothelial zinc finger 1. (462 aa)    
Predicted Functional Partners:
terf2
HTH myb-type domain-containing protein.
    
 0.566
srbd1
S1 RNA binding domain 1.
    
 
 0.562
dclre1b
DNA cross-link repair 1B.
    
 
 0.552
naif1
Nuclear apoptosis inducing factor 1.
      
 0.542
LOC101175080
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
 0.535
LOC101164976
Nuclear receptor subfamily 2, group C, member 1.
    
 0.533
nr2c2
Nuclear receptor subfamily 2, group C, member 2.
    
 0.533
LOC101167429
Uncharacterized protein.
    
 
 0.529
LOC101158397
Poly(rC) binding protein 3.
    
 
 0.529
LOC101168686
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
     
 0.522
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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