STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164605Retinol dehydrogenase 12. (365 aa)    
Predicted Functional Partners:
aldh1a2
Retinaldehyde dehydrogenase type2; Belongs to the aldehyde dehydrogenase family.
  
 0.947
cyp26a1
Cytochrome P450 26A1; Belongs to the cytochrome P450 family.
   
 
 0.923
LOC101157281
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.919
aox1
Aldehyde oxidase beta.
     
 0.910
retsat
Retinol saturase (all-trans-retinol 13,14-reductase).
    
 0.852
slc27a6
Solute carrier family 27 member 6.
    
 0.792
ptgfr
Prostaglandin F receptor (FP); Belongs to the G-protein coupled receptor 1 family.
   
 
 0.725
LOC101162403
Si:ch1073-13h15.3.
    
 0.713
LOC101173846
Uncharacterized protein.
    
 0.713
LOC101166984
O-acyltransferase.
   
 
 0.687
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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