STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168823Cysteine-serine-rich nuclear protein 1b. (581 aa)    
Predicted Functional Partners:
LOC101164996
Fork-head domain-containing protein.
      
 0.811
LOC101165098
Zgc:153115.
      
 0.811
LOC101173151
Calponin-homology (CH) domain-containing protein.
      
 0.811
GADD45B
Growth arrest and DNA damage inducible beta.
   
  
 0.748
msx1
Muscle segment homeobox 1a.
      
 0.559
mknk2
MAPK interacting serine/threonine kinase 2b; Belongs to the protein kinase superfamily.
      
 0.519
fgf3
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.503
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
      
 0.502
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.