STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156182Si:ch211-243g18.2; Belongs to the intermediate filament family. (427 aa)    
Predicted Functional Partners:
pak4
Non-specific serine/threonine protein kinase.
      
 0.589
tfec
Transcription factor EC.
      
 0.505
LOC101167699
Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma).
   
  
 0.472
LOC101172838
FinTRIM family, member 82.
  
    0.444
LOC101174240
Cation/H+ exchanger protein 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
      
 0.440
LOC101174234
POU domain protein.
      
 0.437
LOC101172601
FinTRIM family, member 83.
  
    0.433
tfap2d
Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).
   
  
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.