STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165523Uncharacterized protein. (323 aa)    
Predicted Functional Partners:
LOC101171770
Uncharacterized protein.
    
 0.586
banf1
Barrier to autointegration factor 1.
    
 0.586
ppp1r12a
Protein phosphatase 1, regulatory subunit 12A.
   
 0.553
lmnb2
Lamin B2; Belongs to the intermediate filament family.
   
 0.542
LOC101160250
Uncharacterized protein; Belongs to the intermediate filament family.
   
 0.542
lmna
Lamin A; Belongs to the intermediate filament family.
   
 0.542
LOC101168604
Lamin L3; Belongs to the intermediate filament family.
   
 0.542
dek
DEK proto-oncogene.
   
 
 0.472
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
chd4
Uncharacterized protein.
    
 0.436
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.