STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170530Ring finger and CCCH-type domains 2. (1143 aa)    
Predicted Functional Partners:
cnot1
CCR4-NOT transcription complex, subunit 1.
   
 
 0.765
helz
Helicase with zinc finger.
   
 
 0.677
trip12
Thyroid hormone receptor interactor 12.
   
    0.676
LOC101158138
Ring finger and CCCH-type domains 1b.
  
 
  
0.673
aff4
AF4/FMR2 family, member 4.
   
 
 0.635
xrn1
5'-3' exoribonuclease 1.
   
 
 0.611
LOC101175201
LsmAD domain-containing protein.
   
 
 0.601
ltn1
RING-type domain-containing protein.
   
  
 0.586
cnot9
CCR4-NOT transcription complex subunit 9.
    
 
 0.577
Nufip2
Nuclear FMR1 interacting protein 2.
   
 
 0.570
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.