STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chst2Sulfotransferase; Belongs to the sulfotransferase 1 family. (456 aa)    
Predicted Functional Partners:
chst8
Carbohydrate sulfotransferase.
      
 0.839
acbd4
Acyl-CoA binding domain containing 4.
      
 0.825
depdc4
Si:ch211-265o23.1.
      
 0.803
pald1
Phosphatase domain containing paladin 1a.
      
 0.668
tcp11
Uncharacterized protein.
      
 0.584
ntan1
Uncharacterized protein.
      
 0.559
lum
Lumican.
     
 0.544
fmod
Fibromodulin a.
     
 0.509
kera
Keratocan.
     
 0.494
alg12
Mannosyltransferase.
      
 0.483
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.