STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173658Si:ch1073-82l19.1. (737 aa)    
Predicted Functional Partners:
cul2
Cullin 2; Belongs to the cullin family.
    
 0.800
zyg11b
Zyg-11 homolog (C. elegans).
  
  
 
0.552
LOC101165407
Zinc finger, SWIM-type containing 6.
     
  0.540
ZSWIM6
Zinc finger SWIM-type containing 6.
     
  0.540
zswim5
Zinc finger, SWIM-type containing 5.
     
  0.540
appbp2
Amyloid beta precursor protein (cytoplasmic tail) binding protein 2.
     
  0.540
zer1
Zyg-11 related, cell cycle regulator.
     
 
0.540
zswim8
Zinc finger, SWIM-type containing 8.
     
  0.540
eloc
Elongin C paralog b; Belongs to the SKP1 family.
    
 
 0.428
ENSORLP00000041981
Uncharacterized protein.
    
 
 0.428
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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