STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166961Si:dkey-222n6.2; Belongs to the intermediate filament family. (422 aa)    
Predicted Functional Partners:
bag3
BCL2 associated athanogene 3.
    
 0.564
rps27a
Ribosomal protein S27a.
    
  0.516
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
    
 0.451
trap1
TNF receptor-associated protein 1.
    
 0.448
LOC101169506
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
    
 0.448
tsc1
TSC complex subunit 1b.
    
 0.448
ENSORLP00000031311
Uncharacterized protein.
    
 0.448
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
    
 0.448
trip12
Thyroid hormone receptor interactor 12.
     
 0.431
birc6
Baculoviral IAP repeat containing 6.
   
 0.428
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.