STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcolce2Procollagen C-endopeptidase enhancer 2b. (416 aa)    
Predicted Functional Partners:
amn
Amnion associated transmembrane protein.
   
 0.701
LOC100125511
Metalloendopeptidase.
   
0.547
tll1
Metalloendopeptidase.
   
0.547
cthrc1
Collagen triple helix repeat containing 1b.
    
 0.544
LOC101175393
Macrophage stimulating 1 receptor a.
    
 0.499
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.499
mst1r
Macrophage stimulating 1 receptor b.
    
 0.499
LOC100125512
Metalloendopeptidase.
   
0.481
col22a1
Collagen, type XXII, alpha 1.
    
 0.464
LOC101172057
Collagen, type V, alpha 2b.
   
 0.430
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.