STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ackr4Atypical chemokine receptor 4b; Belongs to the G-protein coupled receptor 1 family. (366 aa)    
Predicted Functional Partners:
LOC101162278
Chemokine (C-C motif) ligand 25b.
    
 0.980
LOC101164508
Atypical chemokine receptor 4a; Belongs to the G-protein coupled receptor 1 family.
  
  
 
0.903
LOC101170597
SCY domain-containing protein.
     
  0.900
Cxcl13
SCY domain-containing protein.
    
 0.693
LOC101160820
SCY domain-containing protein.
   
 0.675
LOC101170161
SCY domain-containing protein.
  
 0.503
LOC105356475
C-C motif chemokine.
   
 0.450
cxcl12
Chemokine (C-X-C motif) ligand 12b; Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.415
a-sdf1a
Chemokine (C-X-C motif) ligand 12a; Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.415
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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