STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf14PHD finger protein 14. (923 aa)    
Predicted Functional Partners:
hmg20a
High mobility group 20A.
   
 
 0.738
kat6a
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.587
brpf1
Uncharacterized protein.
   
 
0.585
LOC101156010
Bromodomain and PHD finger containing, 3b.
   
 
0.584
LOC101163229
Bromodomain containing 1b.
   
 
0.584
brd1
Bromodomain containing 1a.
   
 
0.584
LOC101156401
Bromodomain and PHD finger containing, 3a.
   
 
0.584
kat6b
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
0.546
sardh
Sarcosine dehydrogenase.
      
 0.485
LOC101172596
Zinc finger protein 618.
      
 0.461
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.