STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170109Neurexophilin; May be signaling molecules that resemble neuropeptides. (267 aa)    
Predicted Functional Partners:
gad2
Glutamate decarboxylase 2.
   
  
 0.631
ca5a
Carbonic anhydrase Va; Belongs to the alpha-carbonic anhydrase family.
   
  
 0.583
LOC101162147
Carbonic anhydrase 15; Belongs to the alpha-carbonic anhydrase family.
   
  
 0.576
ca14
Carbonic anhydrase XIV; Belongs to the alpha-carbonic anhydrase family.
   
  
 0.573
ca8
Carbonic anhydrase VIII; Belongs to the alpha-carbonic anhydrase family.
   
  
 0.573
ca7
Carbonic anhydrase VII; Belongs to the alpha-carbonic anhydrase family.
   
  
 0.571
ca12
Carbonic anhydrase XII; Belongs to the alpha-carbonic anhydrase family.
   
  
 0.564
LOC101172155
Si:dkey-238f9.1.
  
    0.521
LOC105354440
Uncharacterized protein.
  
    0.519
LOC101162515
Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 2.
  
  
 0.510
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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