STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167788RNA binding motif protein 39b. (517 aa)    
Predicted Functional Partners:
son
Uncharacterized protein.
   
 0.891
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
0.889
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.853
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
 0.813
dcaf15
DDB1 and CUL4 associated factor 15.
    
 
 0.794
H2M255_ORYLA
RNA binding motif protein 25a.
   
 0.783
LOC101165683
RNA binding motif protein 25b.
   
 0.783
ENSORLP00000045060
RRM domain-containing protein.
   
 0.783
dda1
DET1 and DDB1 associated 1.
    
 
 0.768
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
  0.763
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.