STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157805-2AA_TRNA_LIGASE_II domain-containing protein. (698 aa)    
Predicted Functional Partners:
LOC101171337
Threonyl-tRNA synthetase.
  
  
 
0.902
LOC101167193
Threonyl-tRNA synthetase-like 2.
  
  
 
0.902
yars1
Tyrosine--tRNA ligase.
  
 
 0.854
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
 
0.848
mrpl15
Mitochondrial ribosomal protein L15.
   
 
 0.790
mrps15
Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.779
mtif2
Mitochondrial translational initiation factor 2.
  
 0.779
vars1
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.762
mrpl22
Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.762
mrps14
Mitochondrial ribosomal protein S14.
   
 
 0.750
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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