STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158848Chitinase, acidic.1; Belongs to the glycosyl hydrolase 18 family. (453 aa)    
Predicted Functional Partners:
hexb
Beta-hexosaminidase.
    
 0.944
LOC101172329
Beta-hexosaminidase.
    
 0.944
nagk
N-acetylglucosamine kinase.
     
 0.900
renbp
Renin binding protein.
     
  0.900
COX3
Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.
    
 0.752
COX2
Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.
    
 0.746
H2M1Z4_ORYLA
Cytochrome c oxidase subunit 7C.
   
 0.702
LOC101174857
Cytochrome c oxidase subunit 5B2.
   
 0.658
COX5B
Cytochrome c oxidase subunit 5B.
   
 0.658
LOC101170680
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 0.602
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.