STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100125507Estrogen-related receptor alpha. (472 aa)    
Predicted Functional Partners:
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
   
 0.981
LOC101169121
Peroxisome proliferator-activated receptor gamma, coactivator 1 beta.
    
 0.871
nrip1
Nuclear receptor interacting protein 1b.
    
 0.715
ncor1
Nuclear receptor corepressor 1.
    
 0.670
ncor2
Nuclear receptor corepressor 2.
    
 0.670
LOC101161835
Lipin 2.
      
 0.660
nrf1
Nuclear respiratory factor 1.
     
 0.608
LOC101159647
Uncharacterized protein.
    
 
 0.594
perm1
Uncharacterized protein.
    
 0.590
LOC101174857
Cytochrome c oxidase subunit 5B2.
   
 
 0.583
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.