STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mier1Mesoderm induction early response 1b, transcriptional regulator. (513 aa)    
Predicted Functional Partners:
dnttip1
Ubiquitin-conjugating enzyme E2C.
    
 
 0.577
cdyl
Chromodomain protein, Y-like.
   
 
 0.576
CDYL2
Chromodomain Y like 2.
   
 
 0.576
cxxc4
CXXC finger 4.
      
 0.545
LOC101167482
Thyroid hormone receptor associated protein 3a.
      
 0.489
anapc15
Anaphase promoting complex subunit 15.
      
 0.481
LOC101169674
SKI family transcriptional corepressor 1.
      
 0.478
zfand5
Zinc finger, AN1-type domain 5a.
      
 0.476
LOC101156111
T-box transcription factor 2a.
    
 
 0.475
LOC101166725
Zic family member 6.
      
 0.466
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.