wdr27 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

wdr27

Uncharacterized protein. (797 aa)

Predicted Functional Partners:

GNG4

0.848

smoc2

0.841

sipa1l2

0.838

Unc79

0.786

SIPA1L1

0.645

LOC101172122

0.645

lrrc23

0.592

LOC101155291

0.580

H2MLD6_ORYLA

0.559

phf10

0.558

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNG4	LOC101155291	ENSORLP00000043590	ENSORLP00000009318	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Signal-induced proliferation-associated 1.	0.573
GNG4	LOC101172122	ENSORLP00000043590	ENSORLP00000044715	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Signal-induced proliferation-associated 1 like 1.	0.639
GNG4	SIPA1L1	ENSORLP00000043590	ENSORLP00000036843	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Uncharacterized protein.	0.639
GNG4	sipa1l2	ENSORLP00000043590	ENSORLP00000036904	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Signal-induced proliferation-associated 1 like 2.	0.836
GNG4	smoc2	ENSORLP00000043590	ENSORLP00000027068	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	SPARC related modular calcium binding 2.	0.842
GNG4	wdr27	ENSORLP00000043590	ENSORLP00000013474	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Uncharacterized protein.	0.848
H2MLD6_ORYLA	wdr27	ENSORLP00000019513	ENSORLP00000013474	Zgc:103697.	Uncharacterized protein.	0.559
LOC101155291	GNG4	ENSORLP00000009318	ENSORLP00000043590	Signal-induced proliferation-associated 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.573
LOC101155291	smoc2	ENSORLP00000009318	ENSORLP00000027068	Signal-induced proliferation-associated 1.	SPARC related modular calcium binding 2.	0.571
LOC101155291	wdr27	ENSORLP00000009318	ENSORLP00000013474	Signal-induced proliferation-associated 1.	Uncharacterized protein.	0.580
LOC101172122	GNG4	ENSORLP00000044715	ENSORLP00000043590	Signal-induced proliferation-associated 1 like 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.639
LOC101172122	smoc2	ENSORLP00000044715	ENSORLP00000027068	Signal-induced proliferation-associated 1 like 1.	SPARC related modular calcium binding 2.	0.637
LOC101172122	wdr27	ENSORLP00000044715	ENSORLP00000013474	Signal-induced proliferation-associated 1 like 1.	Uncharacterized protein.	0.645
SIPA1L1	GNG4	ENSORLP00000036843	ENSORLP00000043590	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.639
SIPA1L1	smoc2	ENSORLP00000036843	ENSORLP00000027068	Uncharacterized protein.	SPARC related modular calcium binding 2.	0.637
SIPA1L1	wdr27	ENSORLP00000036843	ENSORLP00000013474	Uncharacterized protein.	Uncharacterized protein.	0.645
Unc79	wdr27	ENSORLP00000036344	ENSORLP00000013474	Uncharacterized protein.	Uncharacterized protein.	0.786
lrrc23	wdr27	ENSORLP00000045653	ENSORLP00000013474	Leucine rich repeat containing 23.	Uncharacterized protein.	0.592
phf10	wdr27	ENSORLP00000013573	ENSORLP00000013474	PHD finger protein 10.	Uncharacterized protein.	0.558
sipa1l2	GNG4	ENSORLP00000036904	ENSORLP00000043590	Signal-induced proliferation-associated 1 like 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.836