STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abhd17bAbhydrolase domain containing 17B. (288 aa)    
Predicted Functional Partners:
fbxl22
F-box and leucine-rich repeat protein 22.
      
 0.645
srgap3
SLIT-ROBO Rho GTPase activating protein 3.
   
  
 0.618
LOC101167990-2
Dual specificity phosphatase 22b.
      
 0.613
svil
Supervillin a.
      
 0.591
Fbxl3
F-box and leucine-rich repeat protein 3b.
      
 0.586
lypla2
Lysophospholipase 2.
     
 0.571
lypla1
Lysophospholipase 1.
     
 0.571
DGAT1
O-acyltransferase.
   
  
 0.560
COL6A3
Collagen type VI alpha 3 chain.
   
  
 0.510
hras
HRas proto-oncogene, GTPase a.
   
 
 0.434
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.