STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mog-12Homeobox domain-containing protein. (301 aa)    
Predicted Functional Partners:
irx5
Iroquois homeobox 5a.
   
 
 0.542
LOC101167500
Myosin, light chain 1, alkali; skeletal, fast.
    
 
 0.535
asmtl
Acetylserotonin O-methyltransferase-like.
      
 0.534
LOC101155734
Acetylserotonin O-methyltransferase 2.
      
 0.521
GHRHR
Growth hormone releasing hormone receptor; Belongs to the G-protein coupled receptor 2 family.
      
 0.510
sh3rf3
SH3 domain containing ring finger 3.
    
 
 0.509
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
    
 
 0.507
LOC101164766
La ribonucleoprotein domain family, member 1B.
    
 
 0.507
LOC101167578
UPF3A regulator of nonsense mediated mRNA decay.
      
 0.506
chmp2b
Charged multivesicular body protein 2Bb.
      
 0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.