STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162541Ring finger protein 170. (268 aa)    
Predicted Functional Partners:
tmub1
Transmembrane and ubiquitin-like domain containing 1.
    
 
 0.662
ube2j1
Ubiquitin-conjugating enzyme E2, J1.
    
 
 0.622
LOC101166981
ER lipid raft associated 1.
    
 
 0.604
LOC101158114
ER lipid raft associated 2.
    
 
 0.579
c1h6orf120
Zgc:77929.
      
 0.559
tmem259
Transmembrane protein 259.
      
 0.482
rnf41
Ring finger protein 41.
   
  
 0.460
tmub2
Transmembrane and ubiquitin-like domain containing 2.
    
 
 0.457
tmem134
Transmembrane protein 134.
      
 0.453
tor2a
Torsin family 2, member A.
      
 0.448
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.