STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nicn1Nicolin 1. (218 aa)    
Predicted Functional Partners:
tpgs2
Tubulin polyglutamylase complex subunit 2.
    
 0.839
tpgs1
Uncharacterized protein.
    
 0.833
ttll1
Tubulin tyrosine ligase-like family, member 1.
   
 0.819
lrrc49
Uncharacterized protein.
   
 0.766
Lrrc49
Uncharacterized protein.
   
 0.766
ttl
Tubulin tyrosine ligase.
   
 0.654
kiaa1841
Si:ch211-189k9.2.
    
   0.647
tbc1d19
TBC1 domain family, member 19.
    
   0.647
amt
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
 
 
  
 0.644
c6h11orf49
Zgc:92873.
    
   0.623
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.