STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2M5H2_ORYLAStonin-1; May be involved in the endocytic machinery. (703 aa)    
Predicted Functional Partners:
LOC101160018
General transcription factor IIA, 1-like.
 
   
  0.902
gtf2a1
General transcription factor IIA, 1.
 
   
  0.798
H2M6E4_ORYLA
Uncharacterized protein.
     
 0.706
LOC101165932
Intersectin 2a.
     
 0.706
ENSORLP00000034742
Uncharacterized protein.
     
 0.706
ENSORLP00000036645
EH domain-containing protein.
     
 0.706
ENSORLP00000041578
SH3 domain-containing protein.
     
 0.706
suox
Sulfite oxidase.
      
 0.674
gtf2a2
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
     
  0.540
H2M6A2_ORYLA
Intersectin 1 (SH3 domain protein).
     
 0.526
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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