STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim8Tripartite motif containing 8b. (594 aa)    
Predicted Functional Partners:
trim32
Tripartite motif containing 32.
      
 0.678
ecsit
ECSIT signalling integrator.
      
 0.581
sycp1
Uncharacterized protein.
    
 
 0.546
LOC101170421
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.501
LOC101156084
G protein-coupled receptor 22b.
      
 0.501
LOC105357073
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.501
socs1
Suppressor of cytokine signaling 1.
    
 
 0.501
nod2
Nucleotide-binding oligomerization domain containing 2.
    
 0.460
H2LSA2_ORYLA
ISG15 ubiquitin like modifier.
    
 0.418
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.