STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASCL4Achaete-scute family bHLH transcription factor 4. (156 aa)    
Predicted Functional Partners:
bhlhe23
Basic helix-loop-helix family, member e23.
   
 
 0.572
ENSORLP00000035296
Basic helix-loop-helix family, member a9.
      
 0.559
LOC100820722
Transcription factor 3b.
   
 0.530
tcf12
Transcription factor 12.
   
 0.530
TCF4
Transcription factor 4.
   
 0.530
tcf3
E2A2 transcription factor.
   
 0.530
LOC101161725
BHLH domain-containing protein.
   
 0.499
LOC101162780
LIM domain binding 1a.
    
 0.434
ldb2
LIM domain binding 2a.
    
 0.434
LOC101158085
LIM-domain binding 1b.
    
 0.434
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.