STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syne3KASH domain-containing protein. (1149 aa)    
Predicted Functional Partners:
LOC101162344
SUN domain-containing protein.
    
 0.685
sun1
SUN domain-containing protein.
    
 0.685
ENSORLP00000031069
KASH domain-containing protein.
     
0.592
ENSORLP00000033632
Si:dkeyp-77c8.3.
     
 0.592
ENSORLP00000035310
Uncharacterized protein.
     
 0.592
ENSORLP00000037196
Uncharacterized protein.
     
 0.592
ENSORLP00000038176
Uncharacterized protein.
     
 0.592
ENSORLP00000040096
Uncharacterized protein.
     
 0.592
ENSORLP00000041222
Uncharacterized protein.
     
 0.592
ENSORLP00000044017
Spectrin repeat containing, nuclear envelope 2b.
     
0.592
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.