STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171056Lysine (K)-specific demethylase 2Aa. (1237 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.999
rnf2
Ring finger protein 2.
   
 
 0.872
RING1
Ring finger protein 1.
   
 
 0.872
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.862
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.862
cacul1
CDK2 associated cullin domain 1; Belongs to the cullin family.
    
 0.862
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.862
ENSORLP00000027520
Ubiquitin-like domain-containing protein.
    
 0.840
rps27a
Ribosomal protein S27a.
    
 0.840
ENSORLP00000045836
Ubiquitin-like domain-containing protein.
    
 0.840
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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