mta1 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mta1

Metastasis associated 1. (680 aa)

Predicted Functional Partners:

rbbp4

0.942

LOC101156710

0.942

LOC101172482

0.879

LOC101163357

0.878

LOC101174845

0.849

LOC101167742

0.849

chd5

0.849

chd4

0.849

LOC101167110

0.847

gatad2b

0.847

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156710	LOC101163357	ENSORLP00000021495	ENSORLP00000019083	Retinoblastoma binding protein 4, like.	Uncharacterized protein.	0.874
LOC101156710	LOC101167110	ENSORLP00000021495	ENSORLP00000000886	Retinoblastoma binding protein 4, like.	GATA zinc finger domain containing 2Ab.	0.905
LOC101156710	LOC101167742	ENSORLP00000021495	ENSORLP00000008921	Retinoblastoma binding protein 4, like.	Chromodomain helicase DNA binding protein 3.	0.899
LOC101156710	LOC101172482	ENSORLP00000021495	ENSORLP00000026781	Retinoblastoma binding protein 4, like.	Methyl-CpG binding domain protein 3a.	0.883
LOC101156710	LOC101174845	ENSORLP00000021495	ENSORLP00000007931	Retinoblastoma binding protein 4, like.	Chromodomain helicase DNA binding protein 4a.	0.899
LOC101156710	chd4	ENSORLP00000021495	ENSORLP00000028847	Retinoblastoma binding protein 4, like.	Uncharacterized protein.	0.899
LOC101156710	chd5	ENSORLP00000021495	ENSORLP00000021515	Retinoblastoma binding protein 4, like.	Uncharacterized protein.	0.899
LOC101156710	gatad2b	ENSORLP00000021495	ENSORLP00000013630	Retinoblastoma binding protein 4, like.	GATA zinc finger domain containing 2B.	0.905
LOC101156710	mta1	ENSORLP00000021495	ENSORLP00000013956	Retinoblastoma binding protein 4, like.	Metastasis associated 1.	0.942
LOC101156710	rbbp4	ENSORLP00000021495	ENSORLP00000021493	Retinoblastoma binding protein 4, like.	Retinoblastoma binding protein 4.	0.900
LOC101163357	LOC101156710	ENSORLP00000019083	ENSORLP00000021495	Uncharacterized protein.	Retinoblastoma binding protein 4, like.	0.874
LOC101163357	LOC101167110	ENSORLP00000019083	ENSORLP00000000886	Uncharacterized protein.	GATA zinc finger domain containing 2Ab.	0.797
LOC101163357	LOC101167742	ENSORLP00000019083	ENSORLP00000008921	Uncharacterized protein.	Chromodomain helicase DNA binding protein 3.	0.784
LOC101163357	LOC101174845	ENSORLP00000019083	ENSORLP00000007931	Uncharacterized protein.	Chromodomain helicase DNA binding protein 4a.	0.784
LOC101163357	chd4	ENSORLP00000019083	ENSORLP00000028847	Uncharacterized protein.	Uncharacterized protein.	0.784
LOC101163357	chd5	ENSORLP00000019083	ENSORLP00000021515	Uncharacterized protein.	Uncharacterized protein.	0.784
LOC101163357	gatad2b	ENSORLP00000019083	ENSORLP00000013630	Uncharacterized protein.	GATA zinc finger domain containing 2B.	0.797
LOC101163357	mta1	ENSORLP00000019083	ENSORLP00000013956	Uncharacterized protein.	Metastasis associated 1.	0.878
LOC101163357	rbbp4	ENSORLP00000019083	ENSORLP00000021493	Uncharacterized protein.	Retinoblastoma binding protein 4.	0.874
LOC101167110	LOC101156710	ENSORLP00000000886	ENSORLP00000021495	GATA zinc finger domain containing 2Ab.	Retinoblastoma binding protein 4, like.	0.905