STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
matn1Matrilin 1. (476 aa)    
Predicted Functional Partners:
lum
Lumican.
   
 0.662
MFAP2
Microfibril associated protein 2.
   
 0.492
LOC101167732
Microfibril associated protein 5.
   
 0.486
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
LOC100049240
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
   
 
 0.447
furin
Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family.
   
 
 0.447
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 0.442
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.435
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.433
LOC101157631
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.