STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161205Uncharacterized protein. (1012 aa)    
Predicted Functional Partners:
smarcad1
Uncharacterized protein.
   
 
 0.731
SMAD4
Mothers against decapentaplegic homolog.
   
 0.686
LOC101173916
Mothers against decapentaplegic homolog.
   
 0.686
LOC101163504
Mothers against decapentaplegic homolog.
   
 0.686
anapc4
Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.
   
   0.674
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
    
   0.665
anapc5
Anaphase promoting complex subunit 5.
    
   0.665
anapc7
Anaphase promoting complex subunit 7.
    
   0.665
cdc23
CDC23 (cell division cycle 23, yeast, homolog).
    
   0.665
LOC101169523
Mothers against decapentaplegic homolog.
   
 0.628
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.